In this study, a BIM model of shield tunnel was established to demonstrate the integration of 3D CAD with inspection records. A MRT structural maintenance database, which includes structural deterioration types, inspection records, and repair methods, was designed to interact with the BIM. An inspection prototype system was designed and implemented to perform the MRT structural inspection. The proposed system was designed with mobile-side and server-side systems. The mobile-side system was designed to perform on mobile devices such as tablet computer or smart phones with the ability to mark defects on BIM, as well as to fill in inspection sheets and photos; the server-side system can assign inspection tasks, maintains all inspection records, automatically output inspection reports, and analyze the database to prioritize all maintenance tasks.